Table 1

List of primers and probes used in this study

Genotype

Sequence

Type by probe or size after RE1 digestion

Reference


EBNA-3C

Primers

Sense

5'-AGAAGGGGAGCGTGTGTTGT-3'

Antisense

5'-GGCTCGTTTTTGACGTCGGC-3

Sample et al. (53)

Probes

Type 1

5'-GAAGATTCATCGTCAGTGTC-3'

153 bp2

Type 2

5'-CCGTGATTTCTACCGGGAGT-3'

246 bp

BamHI-F

Primers

Sense

5'-TCCCACCTGTTACCACATTC-3'

Prototype F: 198 bp

Lung et al. (54)

Antisense

5'-GGCAATGGGACGTCTTGTAA-3'

Variant "f": 127 + 71 bp

Probe

5'-AAGGCTACCGTGCTAATTACCTCC-3'

Hudson et al. (55)

BamHI-W1/I1

Primers

Sense

5'-ACCTGCTACTCTTCGGAAAC-3'

Type I: 205 bp

Lung et al. (54)

Antisense

5'-TCTGTCACAACCTCACTGTC-3'

Type "i": 130+75 bp

XhoI site in LMP1

Primers

Sense

5'-AACAGTAGCGCCAAGAGGAG-3'

XhoI+:113 bp

Sandvej et al. (56)

Antisense

5'-ATGGAACACGACCTTGAGAGG-3'

XhoI-: 67+46 bp


1Restriction enzyme; 2Base pairs

Abdirad et al. Diagnostic Pathology 2007 2:25   doi:10.1186/1746-1596-2-25

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