Table 1 |
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List of primers and probes used in this study |
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Genotype |
Sequence |
Type by probe or size after RE1 digestion |
Reference |
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EBNA-3C |
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Primers |
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Sense |
5'-AGAAGGGGAGCGTGTGTTGT-3' |
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Antisense |
5'-GGCTCGTTTTTGACGTCGGC-3 |
Sample et al. (53) |
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Probes |
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Type 1 |
5'-GAAGATTCATCGTCAGTGTC-3' |
153 bp2 |
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Type 2 |
5'-CCGTGATTTCTACCGGGAGT-3' |
246 bp |
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BamHI-F |
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Primers |
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|
Sense |
5'-TCCCACCTGTTACCACATTC-3' |
Prototype F: 198 bp |
Lung et al. (54) |
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Antisense |
5'-GGCAATGGGACGTCTTGTAA-3' |
Variant "f": 127 + 71 bp |
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|
Probe |
5'-AAGGCTACCGTGCTAATTACCTCC-3' |
Hudson et al. (55) |
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|
BamHI-W1/I1 |
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Primers |
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|
Sense |
5'-ACCTGCTACTCTTCGGAAAC-3' |
Type I: 205 bp |
Lung et al. (54) |
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Antisense |
5'-TCTGTCACAACCTCACTGTC-3' |
Type "i": 130+75 bp |
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XhoI site in LMP1 |
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|
Primers |
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|
Sense |
5'-AACAGTAGCGCCAAGAGGAG-3' |
XhoI+:113 bp |
Sandvej et al. (56) |
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Antisense |
5'-ATGGAACACGACCTTGAGAGG-3' |
XhoI-: 67+46 bp |
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|
|
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1Restriction enzyme; 2Base pairs |
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Abdirad et al. Diagnostic Pathology 2007 2:25 doi:10.1186/1746-1596-2-25 |
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